Paolo Di Tommaso

awesome-pipeline. A curated list of awesome pipeline toolkits inspired by Awesome Sysadmin

awesome-java. A curated list of awesome Java libraries

awesome-containers.

awesome-ci. A curated list of awesome continuous integration services

awesome-k8s. A curated list of awesome Kubernetes tools & resources

awesome-db. A curated list of awesome DBs

gatk-swe. GATK pipeline compatible with Cirrus

groovy-native. Skeleton Gradle build for Groovy native compilation

gspark. Sandbox testing Groovy based Spark applications

nf-secrets. Test pipeline for secrets feature

bytebuddy-buildtime. Sandbox for Bytebuddy build time instrumentation

awesome-schedulers.

circo. Clustering system for the cloud

vagrant-with-quemu-provider. Allow the use of Vagrant on macOS with x86 VMs

nf-course-unimi-2021. Nextflow tutorial at BFG Unimi Master course

mcp-micronaut-poc. PoC for Micronaut Model Context Protocol integration

awesome-machine-learning. A curated list of awesome Machine Learning frameworks, libraries and software.

bioinformatics-workflows. minimal example implementations for bioinformatics workflow managers

app-native-cli. Skeleton for Java native CLI app

antlr-hello. Classic Hello world example for ANTLR4 grammar parser

gpt-prompt-engineer. Jupyter Notebook

nextflow-demos. Example Nextflow pipelines and programming techniques

nextflow. A DSL for data-driven computational pipelines

bioinformatics-one-liners. Bioinformatics one liners from Ming Tang

TensorFlow-for-absolute-beginners. TensorFlow for absolute beginners: a 3-hour codelab for self-learning neural network basics without hard math.

simple-react. Powerful Future Streams & Async Data Structures for Java 8

nf-s3-stress-stage. Test script to stress test Nextflow stage dowload

nf-sandbox. Java

groovy-parser. Create a brand new parser for Groovy programming language(project code: Parrot)

nf-sleep. Nextflow