Paul Scherer

deap_analysis. DEAP Dataset Analysis Code

geo2dr. Geo2DR: A Python and PyTorch library for learning distributed representations of graphs.

label_diffusion. Python implementation of label diffusion algorithm for transductive node labelling. Based on Zhou et. al. "Learning with Local and Global Consistency"

protclus. Python 3 library implementing a number of topological clustering techniques used on protein-protein interaction networks.

DrugPairScoringDR. Repository for Distributed representations of graphs for drug pair scoring

gincco. Source code for GINCCo Paper

usualsuspects. Personal tools for making visualisations and other figures that pop up in ML papers all the time.

GNN-C2L. Source code associated with "Spatio-relational inductive biases for spatial cell type deconvolution"

simpleGNN. Pure Python/Numpy implementation of GNNs for expositional purposes.

img2graph. Python tool to change 2D images into graphs.

simpleRNN. Simple Python and Numpy implementations of RNNs. Based of Andrej Karpathy's work. For expositional purposes.

SkyScanner_tequilacartel. JavaScript

hackCambridge. Jupyter Notebook

cell2location. Comprehensive mapping of tissue cell architecture via integrated single cell and spatial transcriptomics (cell2location model)