Hajime Suzuki

minialign. [IMPORTANT: not for real data analysis, only for algorithm evaluation] fast and accurate alignment tool for PacBio and Nanopore long reads

libgaba. Adaptive semi-global banded alignment on string graphs

insn_bench_aarch64. Instruction latency & throughput profiler for AArch64

opa64. Armv8 A64 Assembly & Intrinsics Guide Server

dozeu. SIMD-parallel BLAST X-drop DP on sequence graphs

udon. BAM CIGAR / MD transcoder for compact on-memory representation and quick drawing

adaptivebandbench. Benchmark on adaptive banded algorithm

tenten. dot plotter on top of minimap2

rbread. Header-only, gzread-like reader for gzip, bz2, and xz.

comb. comb aligner -- a graphical nucleotide sequence alignment tool

tinymasker. ultrasensitive alignment for masking repeats on assembly contigs

libgref. k-mer hash index on nucleotide string graphs

diffbench. Benchmark on difference algorithm

nd. streamed blob manipulator

mm2-ivh. minimap2 with interval hashing

libggsea. Graph-to-Graph Seed-and-Extend Alignment

exec-commands. scan markdown files and execute `console` blocks

clock. clock on terminal

unittest.h. simple, single-header unittesting framework for pure C99 codes

libzf. wrapper of stdio / zlib / bzip2, providing zlib-compatible apis

kvec.h. fork of kvec.h in https://github.com/attractivechaos/klib

libfna. FASTA / FASTQ parser in pure C99

miura. Miura-fold pattern generator

act-local-cache-server. save GitHub Actions artifacts and caches in your local

libaw. alignment writer

ge. grep and edit git-tracked files in bulk

qr. print QR code on terminal

ocxtal.github.io. HTML

pbsim3. PBSIM3: a simulator for all types of PacBio and ONT long reads

xd. SIMD-parallel ultrafast binary dump

sushi. Shell

bench.h. benchmarking utility for C99 codes

cvec. utils to handle char vectors

box.py. box outline generator for laser cutters

lmm.h. malloc wrapper with context-local naive memory allocation

libpsort. pthread-parallel, write-combining integer radixsort

vfdc. table clock with NEC LD8035 VFD tubes on PSoC5LP