Nathan S. Watson-Haigh

parallel-rsync. Parallelised rsync - using GNU parallel

amos. A clone of the official AMOS git repo on sourceforge: https://sourceforge.net/projects/amos/

ngs-handout. This project is in the process of being ported over to another repository.

snakemake-tutorial. Python

2019_EMBL-ABR_Snakemake_webinar. Scripts and Snakemake pipeline used in the EMBL-ABR webinar

embl-abr-snakemake-nextflow-workshop. Hands-on workshop for Snakemake and Nextflow

nathan_sysadmin_scripts. A collection of various sysadmin-related scripts which others might find useful.

safpis. safpis is a Python library to access the South Australia Fuel Pricing Information Scheme (SAFPIS) REST API

nectar-workshop-template. Files used for instantiating multiple VMs on the Australian NeCTAR Reseach Cloud for the purpose of running hands-on training workshops. It is also possible to generate NX Session files making the NX client setup fast and painless.

snakemake_template. A small template to ease setting up new Snakemake workflows capable of submitting jobs to a Slurm cluster such as phoenix.

ronin_snakemake_demo. Demonstration Snakemake workflow for Ronin/AWS Slurm-based auto-scaling cluster

docker-seqtools. Dockerfile for SeqTools (Blixem, Dotter, Belvu) from the Sanger

sga. de novo sequence assembler using string graphs

cloudbiolinux. CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

nectar_flavor. Python

seqtk. C