Andrey Kislyuk

yq. Command-line YAML, XML, TOML processor - jq wrapper for YAML/XML/TOML documents

argcomplete. Python and tab completion, better together.

watchtower. Python CloudWatch Logging: Log Analytics and Application Intelligence

keymaker. Lightweight SSH key management on AWS EC2

ensure. Validate conditions, Python style.

aegea. Amazon Web Services Operator Interface

eight. Python 2 to the power of 3

rehash. Resumable hashlib: a picklable interface to CPython's OpenSSL-based hashlib standard library

tweak. Python application configuration engine

node-complexify. node.js port of jquery.complexify.js

katalin. A GitHub action that generates LLM-assisted suggestions for improving Python code in PRs

likelybin. Unsupervised binning of metagenomes using MCMC.

encryptxml. Python XML Encryption library

hstspreload. HSTS and HPKP support for Python HTTP clients - This repository has moved to:

roof. Friendly Python test coverage reporting

gs. A minimalistic Google Storage client

chalice-app-template. An AWS Lambda serverless app template with Terraform deployment management

dx-falcon. DNAnexus Falcon app prototype

dnanexus-answers. DNAnexus Answers

hipston. High Performance Storage Object Namespace

ftp_fetcher. Shell

dynamoq. A DynamoDB Command Line Interface with JSON I/O

dmtk. DNA Modification Toolkit

tractorbeam. File I/O staging for JSON documents with Amazon S3 URLs

httpnext. Next Generation HTTP for Python

kislyuk.

pagedjs. Display paginated content in the browser and generate print books using web technology

medaka. Sequence correction provided by ONT Research

RoseTTAFold. This package contains deep learning models and related scripts for RoseTTAFold

fastp. An ultra-fast all-in-one FASTQ preprocessor (QC/adapters/trimming/filtering/splitting/merging...)

amazon-vpc-user-guide. The open source version of the Amazon VPC docs. You can submit feedback and requests for changes by submitting issues in this repo or by making proposed changes and submitting a pull request.

s3transfer. Amazon S3 Transfer Manager for Python

httpx. A next generation HTTP client for Python. 🦋

swipe. SFN-WDL infrastructure for pipeline execution - a template repository and Terraform module for SFN-WDL based projects

brotli. Brotli compression format

aws_encyclopedia. This repo is meant to be a place where AWS concepts, documentation, guides, and code can be shared freely. All credit for work is attributed, let me know if I missed something.

simpleyaml.

komplexity. A method of assessing sequence complexity based on kmer frequencies

ctftool. Interactive CTF Exploration Tool

kislyuk.github.io. HTML

miniwdl. A static analysis toolkit for the Workflow Description Language

django-storages. https://django-storages.readthedocs.io/

moto. A library that allows you to easily mock out tests based on AWS infrastructure.

crc32c. A python package exposing the Intel SSE4.2 CRC32C instruction

click. Python composable command line interface toolkit

wdl. Workflow Description Language - Specification and Implementations

Probabilistic-Programming-and-Bayesian-Methods-for-Hackers. aka "Bayesian Methods for Hackers": An introduction to Bayesian methods + probabilistic programming with a computation/understanding-first, mathematics-second point of view. All in pure Python ;)

python-json-pointer. Resolve JSON Pointers in Python

compsci-papers. Influential computer science papers

sysadmin-reading-list. Reading list for the larval stage sysadmin

ExpressionMatrix2. Software for exploration of gene expression data from single-cell RNA sequencing.

HLA. xHLA: Fast and accurate HLA typing from short read sequence data

docs. Documentation resources for dat and the surrounding ecosystem

Azimuth. Machine Learning-Based Predictive Modelling of CRISPR/Cas9 guide efficiency

hisat. Fast spliced aligner with low memory requirements