Nijmegen, The Netherlands

Johannes Textor

Elite
@jtextor

Computational biologist, interested in modelling, Bayesian networks and causality.

dagitty. Graphical analysis of structural causal models / graphical causal models.

346

epitope-prediction. R package implementing a simple method for CD8 T cell epitope prediction by MHC class I binding for HLA and other MHC-I molecules.

15

cpm. Implementation of the cellular Potts model in pure javascript for fun an easy visualisation.

11

immunet. Python

11

insilico-trials. Simulation models for immunotherapy and chemotherapy trials

8

limmsim. C++

5

trialMinRand. Imbalance-minimizing adaptive randomisation for clinical trials. R package.

4

bayesianNetworks. Repository of the Bayesian Networks course at RU

4

MotilityLab. R package for analyzing cell tracking data, or any kind of tracks of moving objects.

4

localTesting. Code related to the paper "Local Fit Evaluation of Structural Equation Models Using Graphical Criteria" by @felixthoemmes, @yrosseel, @jtextor

3

libdagitty. JavaScript library for causal inference in graphical models

2

change-scores. Simulations showing inferential biases that can arise from using change scores

1

negsel. String-based models of thymic selection in the immune system.

1

noseph.

1

tcr-segregation. Analysis code for a T cell receptor sequencing paper.

1

cd5-scrna. Single-cell RNA sequencing analysis of naive T cells correlated to CD5 expression

1

artistoo-models. Collection of simulation models implemented using the artistoo framework.

1

tiltools. R package containing miscellaneous utility functions, mainly for data visualization.

1

2020-ctl-killing. Code for Manuscript "Cancer cell elimination by cytotoxic T cell cooperation and additive damage"

1

sci-transcripts. Transcripts for Statistical and Causal Inference

1

wfsm-based-population-algorithms. Population-Based Algorithms Built on Weighted Automata

1

cpmjs. CPM implementation in pure javascript (Node module)

1

migration. Code related to immune cell migration research

1

tcr-self-reactivity. Code for analysis of weakly or strongly self-reactive T cells

1

tracking. Simple code for tracking cells

1

in-silico-clinical-trials. R

1

MIIVsem. R

1

gpu-cpm. Cuda

1
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