I'm working on protein structure-related problems, using molecular dynamics simulations and deep learning.
fep_tutorial. Rich Text Format
47autodock-gpu-pipeline. Python
2docking. Protein-ligand docking
1md_analysis. Jupyter Notebook
1PyTorch_Sklearn_rasbt. Jupyter Notebook
1diffusion-model-from-scratch. Jupyter Notebook
1Hackerrank-Problem-Solving. Jupyter Notebook
1Diffusion-Models-pytorch. Pytorch implementation of Diffusion Models (https://arxiv.org/pdf/2006.11239.pdf)
1AF2-kinase-conformational-landscape. All code used in "Investigating the conformational landscape of AlphaFold2-predicted protein kinase structures" Al-Masri and Trozzi et al. 2023
1mdgen. Generative modeling of molecular dynamics trajectories
1DiffAlign-FM. Python
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