Alex Rubinsteyn

fancyimpute. Multivariate imputation and matrix completion algorithms implemented in Python

parakeet. Runtime compiler for numerical Python

bcb731. Defense Against the Dark Arts

ocaml_llvm. Toy compiler for OCaml Meetup

moving_pictures. Create a movie from a sequence of images in Python (uses PIL and ffmpeg)

knnimpute. Python implementations of kNN imputation

striate. Convolutional Neural Networks in Python

shiver. A multi-threaded work queue for LLVM functions

dsltools. Helpers for DSL construction in Python

genepool. Framework for writing evolutionary optimization algorithms in OCaml

texture_synthesis. Repetitive pretty pictures on demand

parakeet-retired. Parallelizing Runtime for Array Languages

arma. Estimating ARMA model parameters using stochastic gradient descent

immuno. Predicting immunogenicity of short peptides

adversarial-impute. Possibly ill-fated experimented with Generative Adversarial Imputation

deep-learning-for-bio. Deep Learning for Biology

censored_regression. Linear regression with lower-bound labels

mhcpred. MHC Binding Prediction

ml-experiments. Experiments with Jax, PyTorch and variable length sequence models

bytestar. Analyze Python bytecode using an SSA control flow graph representation

brainmets. Survival prediction for brain metastases

attention-in-neural-networks. Code for Miami ML meetup on Attention in Neural Networks

simple-somatic-variant-calling. A simple genomics "pipeline" implemented via shell scripts

cryptogram. Pixel-level crypto for JPEG photo sharing.

nnseq. Multi-sequence learning using recurrent neural networks

data-experiments. Python

msmhc. Looking for "dark matter" of the MHC ligandome in mass specta

bumpkin. Experiment in writing an OCaml web framework.

pca-magic. PCA that iteratively replaces missing data

image-experiments. Jupyter Notebook

keras. Theano-based Deep Learning library (convnets, recurrent neural networks, and more).

immunesearch. Search for peptide substrings in IEDB T-cell assay data

prototype-pan-allele-class2. Prototype of a pan-allele Class II MHC binding predictor

interval. Conversion between genomic interval/coordinate systems

neoantigens. 🏺 Exploring novel tumor epitope identification

yoclo. You Only Command Line Once

truncatehtml. A Jekyll plugin that truncates HTML while preserving markup structure.

vec. Simple vector expression language implemented in Python