Research engineering | Imaging scientist
org-thesis. Writing a Ph.D. thesis with Org Mode
502writefreely.el. *Frictionless* blogging with Org Mode. No setup required.
107awesome-mri. Awesome Magnetic Resonance Imaging (MRI)
48mr-sequence-diagrams. Draw MR Sequence Diagrams for LaTeX / MetaPost
36scimax-layer. Attempt to bring some of Scimax' functionality to Spacemacs
13dac2bids. Create a BIDS structure for a DICOM folder.
12org-beamerposter. A template for Org Mode beamerposter export.
7neuroimaging-scripts. Miscellaneous fMRI scripts
4love-experiments. Experimental stimulus presentation software using LÖVE
4tfm. Compute temporal functional modes (or atlas based temporal ICA) from functional MRI data.
4org-mode. Emacs Org-mode
3recon-all-lite. A minimal reimplementation of FreeSurfer's recon-all script.
3fslx. A simple and intuitive wrapper for FSL tools.
3dicom-mode. An Emacs minor mode to deal with DICOM images.
2fluctus. Python
2nilearn-cli. Convenient command line tools for nilearn
2yani. yet another neuroimaging (yani) package
2apple-music.el. Search through the apple music catalog from within Emacs
2mrtoolkit-recon. Tutorial exercises on MR Image Reconstruction and Parallel Imaging
2sample-dicom. Repository with a single anonymous dicom available for testing purposes.
2freesurfer. Neuroimaging analysis and visualization suite
2what-is-this-face-called. Find out the name of the face at point.
1sfs. Signal Fluctuation Sensitivity
1SICP. Solutions to SICP exercises.
1ME-ICA. Multi-echo ICA
1ica-yac. Yet Another Classifier for ICA
1dangom.
1d3-timeseries. Hackish plot of timeseries with a pulsar-like look
1icicle-tree-melodic. Icicle tree to visualize the variance explained by each IC component, as output from MELODIC.
1luxinema. Grab schedule of the LUX cinema
1read-it-later.
1org-dual-document. Example on how to use an org-document for two different purposes.
1gomez2024temporal. Code used in the preprocessing and analysis of our 2024 work on the temporal specificity of BOLD fMRI
1mrtoolkit-contrast. Tutorial exercises on MR Image Contrast
1org-mode-padline. Emacs Org Mode
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