Charles Tapley Hoyt

chembl-downloader. Write reproducible code for getting and processing ChEMBL

class-resolver. 🔍 Lookup classes and instantiate them with style

drugbank-downloader. Don't worry about DrugBank licensing - write code that knows how to download it automatically

zenodo-client. A tool for automated uploading and version management of scientific data to Zenodo

umls-downloader. Don't worry about UMLS, RxNorm, SNOMED, or SemMedDB licensing - write code that knows how to download it automatically

pystow. 👜 Easily pick a place to store data for your Python code.

cookiecutter-snekpack. 🍪 A cookiecutter package for an enlightened python package

doctoral-thesis. 📖 Generation and Applications of Knowledge Graphs in Systems and Networks Biology

autoreviewer. 👁️‍🗨️ Scientists often do the same bad stuff. Automate giving deterministic feedback during peer review with determinstic (LLM-free)

ols-client. 🎡 Unified access to OLS instances like from the EBI and TIB

pyrdle. Play Wordle in the CLI. Write an algorithm to play Wordle for you. Ruin all of the fun you've been having.

curies4j. 🐸 Idiomatic conversion between URIs and compact URIs (CURIEs)

quickstatements-client. A data model and client for QuickStatements (for Wikidata)

pydeogram. Generate Ideograms using ideogram.js in Python

rhea-fingerprints. Automatically generate differential reaction fingerprints on reactions in Rhea

ontoportal-client. 🎡 Unified access to OntoPortal instances like BioPortal, AgroPortal, and EcoPortal

semantic-pydantic. Annotate data models in Pydantic and APIs in FastAPI with the Bioregistry to make them more FAIR

geometric-graphs. Generate knowledge graphs with interesting geometries, like lattices

nsockg. "Not Scared of Chemistry" Knowledge Graph

nrl. Network Representation Learning in Python with igraph

opencheck-embed. Graph-based embedding of Twitter followers in OpenCheck

ror-wikidata-enrichment. Propose new relations for ROR from Wikidata