Bowen Jing

alphaflow. AlphaFold Meets Flow Matching for Generating Protein Ensembles

mdgen. Generative modeling of molecular dynamics trajectories

EigenFold. EigenFold: Generative Protein Structure Prediction with Diffusion Models

subspace-diffusion. Improved diffusion generative models with subspaces

promera. Biomolecular co-folding, binder filtering, and nanobody design

switchcraft. SwitchCraft: A Programmatic Framework for Designing State-Switching Proteins

scalar-fields. Equivariant Scalar Fields for Molecular Docking with Fast Fourier Transforms

ProDiT.

tinyprot. A lightweight library for loading and manipulating biomolecular structures

qcnn-pytorch. Quaternion CNN

dynaprot. Python

habsim. Stanford Student Space Initiative High Altitude Balloon Simulator