Andrew Kern

popGenMachineLearningExamples. simple examples of using supervised machine learning for population genetics inference

pdf2pdf. does the magical pdf-to-pdf conversion popular in academic journal submission sites and does it faster than they do

bagels. open source bagel recipe; let's raise the quality of bagels worldwide :bagel: :rocket:

biol610. intro to programming for IE2 evolution students

bio399. Bio399- Computational Genetics

gdp_pgs. Creating a polygenic score predictor of GDP using Arabidopsis GWAS data

evomics. Jupyter Notebook

miscDadiScripts. Various python scripts performing dadi optimization (often using pyOpt's ALPSO)

poolDiffCNV. Some scripts for finding CNVs differing in allele frequency between two pool-seq samples

demogPosSelDadiScripts. Scripts for doing demographic inference using Dadi package.

discoal_multipop. placeholder

manuscript. PopSim consortium manuscript

octo_snakemake. workflow for hifiasm assembly stuff

pgLib. A basic C library for performing population genetic analysis

mkTest. McDonald-Kreitman test written in Ruby

hka. A simple, fast implementation of the Hudson Kreitman Aguadé (1989) test