noisyopt. Python library for optimizing noisy functions.
88scipydirect. Python wrapper to the DIRECT global optimization algorithm with scipy.optimize compatible call syntax
29pyrepseq. Python library for immune repertoire analysis
17projgrad. Projected gradient optimization in python
16easyleed. Software for Low Energy Electron Diffraction I(E)-spectra analysis
14evolimmune. Source code accompanying the paper "Diversity of immune strategies explained by adaptation to pathogen statistics"
8paper-tcellimprint. Source code accompanying the paper "Early life imprints the hierarchy of T cell clone sizes"
4mise. public mise ( http://en.wikipedia.org/wiki/Mise_en_place )
3peptidome. Self/non-self discrimination as a statistical problem
3pydiver. Ecological diversity analysis in python
2optimmune. Source code accompanying the paper "How a well-adapted immune system is organized"
1paper_coincidences. Source code accompanying the paper "Measures of epitope binding degeneracy from T cell receptor repertoires "
1pysnippets. Python snippets and benchmarks
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