Postdoctoral Researcher | PhD Computational Physics
diffusion-equation. Fortran
3bifurcation_plot. bifurcation plot for the Guassian map for different parameters.
3dynamical_systems_neuroscience. Jupyter Notebook
3two_connected_neurons. C++
3gsl-fgsl-example. Fortran
2course_theoretical_neuroscience. Fortran
2harmonics. Jupyter Notebook
2TwitterStreamListner. Python
2HarmonicOscillator. A simple example of solving a harmonic oscillator
2numerical-analysis. Jupyter Notebook
2useful_python_codes. Here, I will post some of the simple and useful pieces of python code I have faced during my projects
2topological_mixing. Fortran
2kuramoto_with_noise. kuramoto with noise
1neuroscience-notebooks. Jupyter Notebook
1MathToolsforNeuroscience. Materials for Mathematical Tools for Neuroscience course at Harvard (Neurobio 212)
1BrainPy. BrainPy: a simulation toolbox for researches in computational neuroscience and brain-inspired computation
1Coupled-HH-neurons. Variation of the Hodgkin-Huxley model to study two coupled neurons.
1BrainPy-Models. Models and examples of BrainPy simulation framework.
1pyHH. A simple Python implementation of the Hodgkin-Huxley spiking neuron model
1open-computational-neuroscience-resources. A publicly-editable collection of open computational neuroscience resources
1learning_cpp. C++
1interactive_neuron_model_simulator. Interactive Matplotlib Plots in Python, convering Models such as the Leaky Integrate and Fire, Izhikevich Model, FitzHugh-Nagumo Model etc...
1Frontiers-for-Young-Minds. Makefile
1ComputationalNeurodynamics. Code and exercises for the Computational Neurodynamics course at Imperial College London
1bootcamp. Caltech Introduction to Programming for the Biological Science Bootcamp
1CompModellingPhysics. Lecture notes and computational exercises for the "Computational Modelling in Physics" module at QUB (PHY1024).
1Kalman-Filters. Kalman filtering, also known as linear quadratic estimation (LQE), is an algorithm that uses a series of measurements observed over time, containing statistical noise and other inaccuracies, and produces estimates of unknown variables that tend to be more accurate than those based on a single measurement alone, by estimating a joint probability distribution over the variables for each timeframe. The filter is named after Rudolf E. Kálmán, one of the primary developers of its theory.
1OpenData. A list of openly available datasets in (mostly human) electrophysiology.
1miniMolDyn. Simple Molecular Dynamics code with openMP parallelisation
1SimulationTutorials. Public tutorials around electrophysiological simulations
1multiscaleGrangerCausality. evaluate Granger Causality at multiple scales with the State Space formulation
1simple_molecular_dynamics. Simple molecular dynamics code, it include parallelization code.
1JuliaCon2019. Slides of my talk "Solving Delay Differential Equations with Julia" at JuliaCon 2019
1simple-molecular-dynamics. Some C++ code for basic Molecular Dynamics simulations.
1C. All Algorithms implemented in C
1Simple-Molecular-Dynamics-1. Simple Molecular Dynamics simulation, coursework for Compuational Physics course (Physics MSc level, Leiden University, 2019). Received grade: 10/10.
1stochastic-delay-differential-equation. Python
1EEG-Emotion-classification. Python
1ComputationalNeuroscience-1. Jupyter Notebook
1neural_network_dynamics. Theoretical analysis and numerical simulations of the emergent dynamics in spiking neural networks
1web_exercise. HTML
1python-for-neuroscience. A workshop for teaching python to neuroscientists with some previous programming experience.
1ComputationalNeuroscience. Simulations of various neuronal properties found in the brain, built using Python within Jupyter Notebook.
1itng_nest. Nest Simulator quick guides and examples, adding new model using NESTML
1GeneticAlgorithmsWithPython. source code from the book Genetic Algorithms with Python by Clinton Sheppard
1comp-neurosci. Problem sets and materials for systems and computational neuroscience course
1Computational-Neuroscience-UW. Python scripts that supplement the Coursera Computational Neuroscience course by the University of Washington
1python-in-neuroscience-tutorials. Collection of tutorials about methods of computational neuroscience using Python
1ModelingNeuralDynamics. An Introduction to Modeling Neuronal Dynamics - Borgers in python, Single Neuron Models, Mathematical Modeling, Computational Neuroscience, Hodgkin-Huxley Equations, Differential Equations, Brain Rhythms, Synchronization, Dynamics
1CNCC-2019. Computational Neuroscience Crash Course (CNCC 2019)
1Computational-Neuroscience-3. Code for the assignments for the Computational Neuroscience Course BT6270 in the Fall 2018 semester
1CNS2019_NEST_Tutorial. Jupyter Notebook
1Computational-Neuroscience-1. Jupyter Notebook
1MonteCarloIntegration. Python
1state_space. Limbo
1awesome-computational-neuroscience. A list of schools and researchers in computational neuroscience
1hopfieldNeuralNetwork. A simple Hopfield neural network for recalling memories
1Neuroscience-Information-Theory-Toolbox. A MATLAB toolbox for performing information theory analyses of neuroscience data
1python_neurobootcamp. Jupyter Notebook
1markdown_examples. this is a test repo for writing some reports in markdown format for using in github page
1