Moritz E. Beber

structurizr-python. A Python 3 port of Simon Brown's Structurizr diagrams-as-code architecture description tool.

httpx-limiter. A lightweight package that provides rate-limited httpx transports.

nextflow-gotchas. A collection of unexpected challenges and learnings with nextflow and nf-core.

errorpages-demo. A Docker stack that demonstrates different desirable behaviour of the traefik errors middleware. Please read the accompanying post.

fastapi-mount. A minimal application for prototyping mounting the main FastAPI at a sub path.

nextflow-utility-services. A collection of Groovy classes that provide utility services to nextflow pipelines.

BRENDA-Parser. Classes to parse the BRENDA database.

fastapi-base. A base Docker image for microservices using FastAPI. The Docker image environment is based on Alpine Linux or Debian.

Notebooks-Launcher. script to handle setting up, launching, and shutting down of ipython notebook instances per user.

metanetx-sdk. Parse and process information from MetaNetX for MIRIAM compatibility using the Identifiers.org registries.

jinja2-ospath. A tiny Jinja2 extension that introduces dirname and basename as template filters.

dependency-info. Retrieve and print Python package dependencies.

nf-core-adr. Structurizr documentation of nf-core

python-package-template. A complete Python package cookiecutter template with lots of bells and whistles.

tyche. Randomly sub-sample sequencing reads to a specified coverage or number of bases.

jupyter_presentation. Material and notebooks for an interactive Jupyter presentation.

cookiecutter-nf-plugin. A cookiecutter template for creating nextflow plugins.

pip-compile. A minimal Docker image that provides a Python environment with pip-tools in order to lock requirements files.

x-grumpy. A Docker image that can be run with x11docker in order to access the ScrumPy GUI without hassle.

nf-slack. Create notification messages from nextflow using incoming webhooks for Slack.

metanetx-assets. Transform MetaNetX components information and load them into SQL storage.

visual-merge. Visualize package hierarchies and allow for links between different hierarchies.

kraken2-bracken-test-db. Temporary place to host the kraken2 & Bracken database construction pipeline.