HelloWorldLTY

scEval. Codes for paper: Evaluating the Utilities of Large Language Models in Single-cell Data Analysis.

MuSe-GNN. [NeurIPS 2023] Official codes of "MuSe-GNN: Learning Unified Gene Representation From Multimodal Biological Graph Data"

UKBioLM. [NPJ AI] A foundation model for individual genome modelling

scELMo. [Cell Patterns] Codes for paper: scELMo: Embeddings from Language Models are Good Learners for Single-cell Data Analysis

spEMO. [Nature Biomedical Engineering]This is the official code repo for the paper: spEMO: Exploring the Capacity of Foundation Models for Analyzing Spatial Multi-Omic Data.

BAITSAO. [Nature Communications] A foundation model for drug synergy analysis

Geneverse. [EMNLP 2024] This is the official code repo for the paper: Geneverse: A collection of Open-source Multimodal Large Language Models for Genomic and Proteomic Research.

CVQVAE. Codes for paper: CVQVAE: A REPRESENTATION LEARNING METHOD FOR MULTI-OMICS SINGLE CELL DATA INTEGRATION

AWGAN. Codes for paper: AWGAN: A Powerful Batch Effect Removal Model for scRNA-seq Data

VISTA. Jupyter Notebook

Deepsynergy_pytorch. A pytorch and lightining version of Deepsynergy

UNICORN. [Nature Communications] Universal prediction model

SuperGLUE. [Cell Reports Methods] SuperGLUE

sprefine. Codes for paper: spRefine Denoises and Imputes Spatial Transcriptomics with a Reference-free Framework Powered by Genomic Language Model

Awesome-DNA-Language-Modelling. This is a repo for papers/projects focusing on DNA sequence modelling

VISTA_reproduce. The codes used to reproduce the results in paper: VISTA Uncovers Missing Gene Expression and Spatial-induced Information for Spatial Transcriptomic Data Analysis

DanQ_pytorch. The pytorch version of DanQ.

ARIEL. Python

evo2. Genome modeling and design across all domains of life

transformGamPoi-Paper. HTML

MOK. A mixture of experts version of KANs

Open-problems-for-single-cell-2022-Silver-medal-solution. Jupyter Notebook

mnnpy. An implementation of MNN (Mutual Nearest Neighbors) correct in python.

ai-deadlines. :alarm_clock: AI conference deadline countdowns

HelloWorldLTY.github.io. Github Pages template for academic personal websites, forked from mmistakes/minimal-mistakes

ECE385-PNG-WAV-processing. Helper Tools for ECE385 Final Projects, PNG_TO_RAM(for SRAM), PNG_TO_TXT (for On-chip Memory), WAV_TO_RAM(for flash/SRAM/SDRAM)

RobustCell. Jupyter Notebook

scLLMExplorer. Codes for the "AI Foundation Models" course project

CS225-DataStructure-inpython. CS225 class example for ZJU-UIUC institute

STAT542-Statistical-Learning. Also known as CS598, Advanced Statistical Learning

GenesTroBot. Codes for paper: GenesTroBot

propr_python. This is a python implementation of r package propr: https://www.nature.com/articles/s41598-017-16520-0

Tangram_v2. update tangram with correlation regularization and batch design