Marijn van Vliet

gtklock. GTK-based lockscreen for Wayland

sway. i3-compatible Wayland compositor

Waybar. Highly customizable Wayland bar for Sway and Wlroots based compositors. :v: :tada:

linus-torvalds-skills. A single CLAUDE.md file to improve Claude Code behavior, derived from Linus Torvalds' observations on coding pitfalls.

EEG-Datasets. A list of all public EEG-datasets

SPINE. Code for SPINE - Sparse Interpretable Neural Embeddings. Jhamtani H.*, Pruthi D.*, Subramanian A.*, Berg-Kirkpatrick T., Hovy E. AAAI 2018

AntiHPSpyware. Anti HP Analytics / Spyware / Bloatware tool for Windows 10+

bids-specification. Brain Imaging Data Structure (BIDS) Specification

DynVision. A Modeling Toolbox for Biologically Plausible Recurrent Dynamical Visual Networks

sparse-coding. Parallel (asynchronous) sparse coding implementation for obtaining sparse overcomplete word vectors

datahugger. One downloader for many scientific data and code repositories! DOI :open_hands: Data

lastu. Python

predify. Python

prespy. Package for working with the Neurobehavioural Systems Presentation logfiles within python

PredictiveCodingModel_N400. A predictive coding model of the N400 event-related potential

REPN400. Predictive coding explains the dynamics of neural activity within the left ventromedial temporal lobe during reading comprehension.

pypc. Predictive coding in Python

mneflow. Neural networks for EEG-MEG decoding with MNE-python and Tensorflow.

regl-scatterplot. Scalable WebGL-based scatter plot library build with Regl

himalaya. Multiple-target linear models - CPU/GPU

jobgraph. Visualize CPU and memory usage for Slurm jobs over time, directly in your terminal.

pyqtgraph. Fast data visualization and GUI tools for scientific / engineering applications

bindsnet. Simulation of spiking neural networks (SNNs) using PyTorch.

python-meegkit. 🔧🧠 MEEGkit: MEG & EEG processing toolkit in Python

imaginAIry. Pythonic AI generation of images and videos

CfC. Closed-form Continuous-time Neural Networks

bespokeasm. An assembler that can be configured to work with most any instruction set and architecture.

FNCM. FNCM labs and the associated website

openneuro-py. A client for accessing OpenNeuro datasets, written in Python.

sygil-webui. Stable Diffusion web UI

eyeartifactcorrection. Eye movement and blink-related EEG and MEG artifact correction algorithms

scalene. Scalene: a high-performance, high-precision CPU, GPU, and memory profiler for Python with AI-powered optimization proposals

MandelbrotSSE. Real-time Mandelbrot zoom via SSE, AVX, OpenMP, CUDA, XaoS...

eeg_positions. Compute and plot standard EEG electrode positions.

norse. Deep learning with spiking neural networks (SNNs) in PyTorch.

pymc-resources. PyMC educational resources

Origins-of-VWFA. A convnet of the CorNet family is trained on ImageNet, then on a word dataset of same size. Analyses ensue.

h5io. Read and write simple Python objects using HDF5

NeuroBlender. a Blender add-on for creating neuroscience artwork

vimspector. vimspector - A multi-language debugging system for Vim

snntorch. Deep and online learning with spiking neural networks in Python

debugpy. An implementation of the Debug Adapter Protocol for Python

ECH60. Numerical Methods using Python

CDWAssignment. Python

vim-pydocstring. Generate Python docstring to your Python source code.

vim-soul. Vim syntax highlighter for the SOUL language

vst_window. Cross-platform windowing library for VST plugins, written in Rust

pydata-sphinx-theme. A clean, three-column Sphinx theme with Bootstrap for the PyData community

vim-matlab. A set of files useful to edit Matlab files (indent, syntax,tags , mlint use...)

captum. Model interpretability and understanding for PyTorch

advent-of-code. My solutions to Advent of Code :evergreen_tree:

AoC2020. Python

code-video-generator. Generates code walkthrough videos using Manim

pytorch-image-models. The largest collection of PyTorch image encoders / backbones. Including train, eval, inference, export scripts, and pretrained weights -- ResNet, ResNeXT, EfficientNet, NFNet, Vision Transformer (ViT), MobileNetV4, MobileNet-V3 & V2, RegNet, DPN, CSPNet, Swin Transformer, MaxViT, CoAtNet, ConvNeXt, and more

TikZ. Complete collection of my PGF/TikZ figures.

interpret. Interpreting Deep Neural Networks with PyTorch

vim-codepainter. A plugin for Vim to color different parts of code making the use of Text Properties

vim-no-color-collections. Collection of Vim themes with barely any colors

Python_for_NeuroMatch. HTML

autoCV. automatic generation of CV

precourse. A repo for the pre-course work at home exercises

til. :memo: Today I Learned

dipole-simulator. Interactive demonstration of how dipole location and orientation affect MEG and EEG sensor signals

python-intro-short. A short introduction to Python

COVID-19. Novel Coronavirus (COVID-19) Cases, provided by JHU CSSE

moabb. Mother of All BCI Benchmarks

DeViSE-zero-shot-classification. DeViSE model (zero-shot learning) trained on ImageNet and deployed on AWS using Docker

CORnet. [NeurIPS'19 Oral] CORnet: Modeling the Neural Mechanisms of Core Object Recognition

blender_freesurfer. Edition of freesurfer surfaces in Blender

dipole_orientation. Analysis code for Bonaiuto, et al "Estimates of cortical column orientation improve MEG source inversion"

EaterCPUSimulation. A simulation of Ben Eater's 8-bit CPU in Logisim Evolution (Holy Cross Edition).

python-is-cool. Cool Python features for machine learning that I used to be too afraid to use. Will be updated as I have more time / learn more.

snn_toolbox. Toolbox for converting analog to spiking neural networks (ANN to SNN), and running them in a spiking neuron simulator.

niworkflows. Common workflows for MRI (anatomical, functional, diffusion, etc)

Feature2Vec. Code used in the paper, Feature2Vec: Distributional semantic modelling of human property knowledge

QuickDraw-pytorch. This is a demo for CNN models training on quickdraw dataset. Implemented with pytorch.

neuropythy. A neuroscience library for Python, intended to complement the existing nibabel library.

sampler. Tool for shell commands execution, visualization and alerting. Configured with a simple YAML file.

autoreject. Automated rejection and repair of bad trials/sensors in M/EEG

alphacsc. Convolution dictionary learning for time-series

mne-bids. MNE-BIDS is a Python package that allows you to read and write BIDS-compatible datasets with the help of MNE-Python.

autojump. A cd command that learns - easily navigate directories from the command line

ElectrophysiologySoftware. A list of openly available software tools for (mostly human) electrophysiology.

jupyter-vim. A two-way integration between Vim and Jupyter Kernels.

megmvpa. MEG MVPA Tutorial

CBIG. MATLAB

deeplearning-models. A collection of various deep learning architectures, models, and tips

hello-css. A CSS template focused on readability

tacit. CSS framework for dummies, without a single CSS class: nicely renders properly formatted HTML5 pages

RetinalCode. Identifying the constraints and redundancies shaping the retinal code with a deep network simulation

RetinalResources. Code for "A Unified Theory of Early Visual Representations from Retina to Cortex through Anatomically Constrained Deep CNNs", ICLR 2019

AnatomyOfMatplotlib. Anatomy of Matplotlib -- tutorial developed for the SciPy conference

scikit-learn. scikit-learn: machine learning in Python

hnn. The Human Neocortical Neurosolver (HNN) is a software tool that gives researchers/clinicians the ability to develop/test hypotheses on circuit mechanisms underlying EEG/MEG data.

pytext. A natural language modeling framework based on PyTorch

git-flight-rules. Flight rules for git

syntect. Rust library for syntax highlighting using Sublime Text syntax definitions.

jiant. jiant is an nlp toolkit

wwwbasic. wwwBASIC is an implementation of BASIC that runs on Node.js and the Web.

diffeomorph. MATLAB

pytorch-cnn-visualizations. Pytorch implementation of convolutional neural network visualization techniques

topicsne. t-SNE experiments in pytorch

developer-roadmap. Interactive roadmaps, guides and other educational content to help developers grow in their careers.

pytorch-deconvnet. Example of Deconvnet in PyTorch for VGG16

tiny_imagenet. TensorFlow Deep CNN for Tiny ImageNet Problem

NYU-DLSP20. NYU Deep Learning Spring 2020

ClickThroughBlocker. C#

krpc. Remote Procedure Calls for Kerbal Space Program

mml-book.github.io. Companion webpage to the book "Mathematics For Machine Learning"

foundations-of-numerical-computing. Lecture Slides, Exercises, and Deployment Materials for "Foundations of Numerical Computing"

DDTBOX. Decision Decoding Toolbox

dataviz. A book covering the fundamentals of data visualization

python3_with_pleasure. A short guide on features of Python 3 with examples

omission_frontiers. Analysis scripts for group analysis of MEG data in both Python and MATLAB associated with Andersen, L.M., 2018. Group Analysis in MNE-Python of Evoked Responses from a Tactile Stimulation Paradigm: A Pipeline for Reproducibility at Every Step of Processing, Going from Individual Sensor Space Representations to an across-Group Source Space Representation. Front. Neurosci. 12. https://doi.org/10.3389/fnins.2018.00006 and Andersen, L. M. Group Analysis in FieldTrip of Time-Frequency Responses: A Pipeline for Reproducibility at Every Step of Processing, Going From Individual Sensor Space Representations to an Across-Group Source Space Representation. Front. Neurosci. 12, (2018). https://10.3389/fnins.2018.00261

scikit-optimize. Sequential model-based optimization with a `scipy.optimize` interface

screenkey. A screencast tool to display your keys inspired by Screenflick

You-Dont-Know-JS. A book series (2 published editions) on the JS language.

PythonDataScienceHandbook. Python Data Science Handbook: full text in Jupyter Notebooks

gsda. You will find the gslda Matlab codes that have been implemented in the paper "Generalized sparse discriminant analysis for event related potential classification"

pymanopt. Python toolbox for optimization on Riemannian manifolds with support for automatic differentiation

ldr. code for Cunningham and Ghahramani (2015), Journal of Machine Learning Research

webvectors. Web-ify your word2vec: framework to serve distributional semantic models online

autovpn. Create On Demand Disposable OpenVPN Endpoints on AWS.

TensorFlow-Book. Accompanying source code for Machine Learning with TensorFlow. Refer to the book for step-by-step explanations.

free-programming-books. :books: Freely available programming books

mmvt. The Multi-Modality Visualization Tool (MMVT) is built for researchers who wish to have a better understanding of their neuroimaging anatomical and spatio-temporal data

vim-ipython. A two-way integration between Vim and IPython 0.11+

iprofiler. Interactive code profiling widget for IPython + Jupyter Notebook

python-progressbar. Clone of python-progressbar

study-path. A curated, open, and ever-evolving learning path focused on practices of software development, principles of software design, and software architecture.

DUP-ocropy. Python-based tools for document analysis and OCR

the-art-of-command-line. Master the command line, in one page

pyparallel. Experimental multicore fork of Python 3

pyRiemann. Machine learning for multivariate data through the Riemannian geometry of positive definite matrices in Python

cool-retro-term. A good looking terminal emulator which mimics the old cathode display...

mne-python. MNE: Magnetoencephalography (MEG) and Electroencephalography (EEG) in Python

DecMeg2014. Official Repository of the code associated with the data analysis competition DecMeg2014

XML-Documentation-for-the-KSP-API. C#

golem. Golem is a modular machine learning library for Python

psychic. Psychic is a Python package for EEG data analysis, with a focus on machine learning.

psychic. Psychic is a set of BCI nodes for Golem, but superseded by the new EEGTools.

golem. Golem is a modular machine learning library for Python. It is no longer maintained, please use scikit-learn instead: http://scikit-learn.org

Chimara. Interactive Fiction GTK Widget