Pjotr Prins

guix-notes. This repo has moved to https://gitlab.com/pjotrp/guix-notes Notes on Guix

bioinformatics. Tools for bioinformatics moved to http://git.genenetwork.org/pjotrp/bioinformatics

biolib. BioLib brings together a set of opensource libraries written in C/C++ and makes them available for all Bio* languages

nix-no-root. Empowered Nix/Guix without root

guix. GNU Guix

blastxmlparser. Fast big data XML parser and library, written in Ruby

rq. Ruby Queue

biogems.info. Tools for keeping track of biogems. Moved to https://git.thebird.nl/free/biogems.info

bioruby-table. Swiss knife of tabular data

bigbio. Big data bioinformatics repository

bioruby-alignment. TODO: one-line summary of your gem

cfruby. CFRuby project

once-only. Execute scripts only once when input is unchanged

bioruby-gff3-plugin. GFF3 plugin for BioRuby - allows parsing big data GFF3

NA-BioRuby.org. New age BioRuby website

rqtl. R/qtl mapping software

EMBOSS-biolib. Git import of EMBOSS CVS repository for Biolib

bioruby-rdf. Bioinformatics parsing and filtering data for triple-stores

linux-at-university-of-tennessee. Using Linux at the University of Tennessee

cmake-support. CMake scripts for BioLib and ASciLib

bioruby-pipeline. TODO: one-line summary of your gem

bioruby-logger-plugin. BioRuby logger

sparql-racket. Racket Sparql module

rqtl-mqm. R/QTL with MQM support

deploy. Pjotr's deployment tools

yaj. Pilot project for Biohackathon 2017

ascilib. A science library - SWIG mappings

bioruby-exominer. Mining publications for gene names

qnorm. High performance quantile normalization (for BioLib)

bioscala. Bioinformatics for the Scala programming language

cloudbiolinux. CloudBioLinux: configure virtual (or real) machines with tools for biological analyses

pfff. --

qtlHD. Re-implementation of R/qtl with clean code, aimed at high-density, high-throughput data

vcflib. C++ library and cmdline tools for parsing and manipulating VCF files

ruby-odgi. Ruby bindings for ODGI

gemma-annotate. Annotation tools for GEMMA

Cross-language-interfacing. Testing cross-language interfaces

libsequence. The libsequence library (for BioLib)

heyu-run. Heyu/X10 electrical appliances runner and state-machine that can run on OpenWRT wifi routers

bh20-seq-resource. Tool to upload SARS-CoV-2 sequences and service to kick off analysis

biolib_hpc. High performance computing for Big Data

orgtexer. Mixing Org mode with LaTeX

bionix. Bio packages for the Nix package system

emboss. Unofficial mirror of the EMBOSS source