Matt Shirley

pyfaidx. Efficient pythonic random access to fasta subsequences

fastqp. Simple FASTQ quality assessment using Python

simplesam. Simple pure Python SAM parser and objects for working with SAM records

hamstring. Tools for generating and decoding error-correcting DNA barcodes

strandex. Sample an approximate number of reads from a fastq file without reading the entire file

transcoorder. Convert SAM/BAM files with transcript coordinates to SAM files with genomic coordinates

Awesome-Bioinformatics. A curated list of awesome Bioinformatics libraries and software.

venusos_starlink. Code for adding control over Starlink POE to VenusOS using ESP32 relay board and Node-RED

hts-python. pythonic wrapper for libhts

nuvinci-spare-parts. Spare parts for NuVinci CVP hubs

cellranger. 10x Genomics Single Cell 3' Gene Expression and VDJ Assembly

pyensembl. Python interface to ensembl reference genome metadata (exons, transcripts, etc...)

mpmd. Configuration and such for my Monoprice mini delta printer

galaxy-json-data-source. Data source tool for importing multiple datasets using a JSON schema

sra-tools-galaxy. NCBI SRA toolkit Galaxy package and tool wrappers

sra-tools. SRA Tools

tripod-web. web application for triPOD detection