Karl Broman

RStudioConf2019Slides. Links to slides for rstudio::conf 2019

simple_site. Minimal tutorial on making a simple website with GitHub Pages

broman. R/broman: A package with Karl Broman's personal R code

RStudioConf2017Slides. Links to slides for talks at the 2017 rstudio::conf

Tools4RR. Materials for a one-credit course on reproducible research

d3examples. Examples of interactive graphics using d3.js

Talk_Graphs. Talk: How to display data badly

pkg_primer. R package primer: a minimal tutorial on writing R packages

qtl. R/qtl: A QTL mapping environment

qtlcharts. R/qtlcharts: An R package for interactive QTL graphics

datasciquotes. Data Science related quotes

miner. R package for controlling Minecraft via API

JSM2016slides. Links to slides for talks at the 2016 Joint Statistical Meetings in Chicago

OpenVisConf2017Slides. Links to slides from OpenVisConf 2017

ProgrammingNotes. My personal notes on various programming languages and tools

kbroman.github.io. Karl Broman's website

github_tutorial. git/github guide: Karl's minimal tutorial

dataorg. Tutorial on organizing data in spreadsheets.

steps2rr. Initial steps toward reproducible research (a minimal tutorial)

wesandersonJS. Wes Anderson palettes for javascript

knitr_knutshell. knitr in a nutshell: a brief guide to knitr

hipsteR. A tutorial to re-educate people with learned R before it was cool

minimal_make. Minimal make: A minimal tutorial on the most important tool for reproducible research

d3panels. A library of d3-based graphic panels, written in CoffeeScript

Talk_OpenAccess. Slides for a talk on Open Access Publishing

Paper_DataOrg. Source for paper, "Data organization in spreadsheets"

FruitSnacks. Counts of each type of fruit snack in each package in a box of 80 packages.

Talk_ReproRes. Talk on reproducible research

JSbroman. Bits of JavaScript and CoffeeScript code, as I learn the languages (with a focus on interactive graphics)

qtl2. QTL analysis software for high-dimensional data and complex cross designs

craft. Extra functions to be used with the miner package

conlinks. List of links to lists of links to conference slides

lmmlite. Simple port of pylmm: linear mixed models for GWAS

academics.wtf. website academics.wtf

AndroidPolarPVC2. Android app to measure PVCs using a Polar H10 chest-strap heart rate sensor

jhudashbike. Analysis of bike safety in Baltimore for JHU DaSH

PyBroman. Various bits of code, while I learn the language

testjs. R package to test use of htmlwidgets

Talk_DataCleaning. Slides for a talk on data cleaning principles

miner_book. A bookdown book on R and Minecraft

horizon. R package to make a static horizon chart with cubism.js

Paper_SampleMixups. Source for paper, "Identification and correction of sample mix-ups in expression genetic data: A case study"

simcross. R package to simulate and plot general experimental crosses

blog. A blogdown-based blog

regress. Gaussian Linear Models with Linear Covariance Structure

Talk_WhyRR. Slides for a short introduction, on "Why reproducible research"

Poster_SampleMixups. Poster on Identifying and correcting sample mix-ups in eQTL data

Paper_Rqtlcharts. Source for paper, R/qtlcharts: interactive graphics for quantitative trait locus mapping

RR_Workshop. Materials for a 1-hour workshop on reproducible research

Talk_JSM2019. Slides for very short presentation as part of panel on Javascript at JSM 2019

preCCProbPaper. Source for paper Broman KW (2012) Genotype probabilities at intermediate generations in the construction of recombinant inbred lines. Genetics 190:403-412

Poster_ENAR2014. Poster: Data visualizations should be more interactive, for ENAR 2014

ricalc. Genotype probability calculations for multiple-strain recombinant inbred lines

BMI882_spring2023. BMI 882 (Biomedical data science scholarly literature 2) from Spring, 2023