Jonathan Carroll

checktor. [On-CRAN] Because submitting packages to CRAN should be less infuritating when humans run extra automated checks that aren't public but still ding your submission

learngenomics.dev. A guided, intuitive introduction to genomics for software engineers. Curated by the community.

btw. A complete toolkit for connecting R and LLMs

clin-rs. Feature-packed TUI note management app inspired by Obsidian

tibblify. Rectangle Nested Lists

storygraph-api. A python package to interact with and scrape the StoryGraph website.

uv-mode. emacs integration for uv virtual environments

ai-job-search-au. Python

WikidataR. An R package for the Wikidata API

tidy-animations. Self-contained animated explainers for data science and ML concepts

froid. A library for using the Frege programming language in Android development.

great-docs. Documentation sites for Python packages: start simple, go deep

neo2R. This R package provides simple connectors for querying neo4j graph databases.

hunk. Review-first terminal diff viewer for agentic coders

vale-tutorial. Learn the Basics of Vale

quartodoc. Generate API documentation with quarto

Pocket-Bird. It's a bird that hops around your apps and browser, the future is here

testit. A simple package for testing R packages

medical-research-skills. Hundreds of agent skills for medical research, including protocol design, data analysis, evidence insights, and academic writing.

rust-but-lisp. Rust but LISP

rpeat. The scheduler for Devs, not DevOps

pensar. R

data-engineering-with-data-build-tool-dbt-4458303. This is a code repository for the course Data Engineering with Data Build Tool (DBT).

s7contract. 'Go'-like interfaces and 'Rust'-like traits with 'S7'

targets. Function-oriented Make-like declarative workflows for R

ggcats. The geom you always wished for adding cats to ggplot2

mori. Shared Memory for R Objects

git-ls. list files and git status in a repository

obsidian-skills. Agent skills for Obsidian. Teach your agent to use Obsidian CLI and open formats including Markdown, Bases, JSON Canvas.

cloture. Clojure in Common Lisp

skill-focus. Summarize a paper with the FOCUS method

stbl. Stabilize Function Arguments

portable-r-macos. Portable version of R for macOS

tarborist. Static analysis for navigating and debugging complex R {targets} pipelines with tree-sitter

jlview. Zero-Copy Julia to R Array Bridge via ALTREP

tipitaka.critical. Lemmatized critical edition of the Pali Canon (Tipitaka) — R package

math-comp-polyglot. HTML

Linkr. A web app for visualization and analysis of healthcare data using OMOP CDM

tlang. OCaml

RCLI. Talk to your Mac, query your docs, no cloud required. On-device voice AI + RAG

anvl. Accelerated array computing and code transformations for R

pipedreams. Pipe-friendly wrappers for common R statistical tests and models.

lstr. A fast, minimalist directory tree viewer, written in Rust.

fixapl. A simple APL derivative, built on fixed-arity functions

reckon. A reasonable theorem prover for your reasoning tasks!

duckdb-r-editor. A Positron IDE extension to create a rich in-line DuckDB SQL editor experience within R files.

printtree. printtree prints a compact directory tree for R projects or any folder. It has a snapshot feature which can generate a PNG file of the tree directory.

arf. Alternative R Frontend — a modern R console written in Rust

dbtplyr. dbt package mimicking dplyr select-helpers semantics

primitive. Reproducing images with geometric primitives.

maptoposter. Transform your favorite cities into beautiful, minimalist designs. MapToPoster lets you create and export visually striking map posters with code.

obsidian-google-liked-video. Extension for pulling and syncing the videos that you liked in Youtube to Obsidian vault.

heatmap-calendar-obsidian. An Obsidian plugin for displaying data in a calendar similar to the github activity calendar

examples. Python

lintr. Static Code Analysis for R

bookclub-duckdb. JavaScript

r-gui-2. R GUI 2: Multiplatform single window GUI for R

translations-dashboard. Dashboard to monitor status of translations in R

yazi. 💥 Blazing fast terminal file manager written in Rust, based on async I/O.

jarl. Just another R linter

unsure. Unsure Calculator

harpie. Haskell Array Programming

applied-data-science-with-haskell. A Haskell port of the exercises in the Applied Data Science With Python Coursera specialisation.

r-dev-day. Repo to organize tasks for R Dev Days

tools. Assorted useful tools, almost entirely generated using LLMs

medxr. The MedxR package provides a unified interface to access open drug regulatory data from the U.S. Food and Drug Administration (FDA) Open API and the Health Canada Drug Product Database API.

Rmlx. R interface to Apple's mlx library

hashcards. A plain text-based spaced repetition system.

Obsidian-knowledgemap. Python

zenith. Zenith - sort of like top or htop but with zoom-able charts, CPU, GPU, network, and disk usage

yt-dlp_alexwlchan. A personal wrapper around yt-dlp that downloads and returns info in my preferred format

the-turing-way. Book repository for The Turing Way: a how to guide for reproducible, ethical and collaborative data science

judo. Multi-database TUI and CLI for ToDo lists

hpffp-resources. Haskell Programming From First Principles - Follow-up Resources

blueycolors. Provides bluey-inspired color palettes and ggplot2 scales

OpenLineage. An Open Standard for lineage metadata collection

building-data-products. Companion repository for Stealth Project #56820BZ

typr. A safer complement of R, the legendary programming language for statistic and datasciences !

keep-sorted. keep-sorted is a language-agnostic formatter that sorts lines between two markers in a larger file.

SimpleUpset. R

kdb-rmathlib. Interface between kdb+ and rmathlib

querychat. Chat with your data in R and Python

duf. Disk Usage/Free Utility - a better 'df' alternative

wanikanir. R interface into the WaniKani API

mirai. Minimalist Async Evaluation Framework for R

ggpointgrid. R Package - Rearrange scatter plot points on a regular grid

APLBootcamp. Resources for the APL Bootcamp

swaptube. youtube video renderer

ruchy-book. The official book for the Ruchy language

ruchy. Ruchy, a systems-oriented scripting language that transpiles to Rust.

meet-ups. Resources from the Interest Group meet-ups

quarto-revealjs-imagemover. repositioning and resizing of images directly in quarto revealjs slides

book. Accompanying repository to O'Reilly's book "Neo4j - The Definitive Guide"

r-kafka. R

r-iterator-ideas. Imagining what a user-extensible iterator protocol for R might look like.

git-mcp. Put an end to code hallucinations! GitMCP is a free, open-source, remote MCP server for any GitHub project

adsp2. HTML

a-conceptual-overview-of-asyncio. Python

mastodon-bookmark-rss. MOVED TO CODEBERG

vocabulary-graph. Experiments in displaying language vocabulary as a graph of related words and phrases

git-statuses. A command-line tool to display the status of multiple Git repositories in a clear, tabular format.

vet. vet is a command-line tool that acts as a safety net for the risky curl | bash pattern. It lets you inspect, diff against previous versions, and lint remote scripts before asking for your explicit approval to execute. Promoting a safer, more transparent way to handle remote code execution.

marimo. A reactive notebook for Python — run reproducible experiments, query with SQL, execute as a script, deploy as an app, and version with git. Stored as pure Python. All in a modern, AI-native editor.

lucky-commit. Customize your git commit hashes!

rcdev. R

quarkdown. 🪐 Markdown with superpowers: from ideas to papers, presentations, websites, books, and knowledge bases.

quickr. R to Fortran Transpiler

rv. Rust

shinyDataFilter. data-agnostic, shiny-idiomatic filter module

grip. Preview GitHub README.md files locally before committing them.

exercism. Repository to start an Exercism track for Dyalog APL

gitdiagram. Free, simple, fast interactive diagrams for any GitHub repository

EoP-2025. Repository for material related to the Programming Languages Virtual Meetup coverage of Elements of Programming

r-hedgehog. Release with confidence, state-of-the-art property testing for R.

bqn. Exercism exercises in BQN.

j. Exercism exercises in J.

tidyprint. Centralised biological data tidy abstractions and messaging

dockViewR. Layout Manager Widget for R and Shiny

what-happens-when. An attempt to answer the age old interview question "What happens when you type google.com into your browser and press enter?"

bmm. get to your bookmarks in a flash

mdq. like jq but for Markdown: find specific elements in a md doc

Rhyton. ⚙️ Simple R to Python transpiler based on Tree Sitter

caretaker. A simple, configurable filesystem watcher

ouch. Painless compression and decompression in the terminal

schemesh. A Unix shell and Lisp REPL, fused together

DeDRM_tools. DeDRM tools for ebooks

TinyAPL. TinyAPL, a tiny APL dialect and interpreter in Haskell

beacon. A native and a cross platform guide for BQN array programming language

lossless-cut. The swiss army knife of lossless video/audio editing

spotify-player. A Spotify player in the terminal with full feature parity

FM2GP-2025. Repository for material related to the Programming Languages Virtual Meetup coverage of From Mathematics to Generic Programming

Shunpo. A minimalist bash tool that makes directory navigation just a little bit faster.

air. R formatter and language server

hs-tax-ato. Tax types and computations for Australia

Quirkey. CircuitPython code for the Pi Pico version of the Quirkey keyboard, rebooted from Microwriter.

ohmyrepl. 🧮 Soothing pastel theme for OhMyREPL

bats-core. Bash Automated Testing System

dictionaries. Python

listopia. List manipulation library inspired by Haskell package Data.List

television. A very fast, portable and hackable fuzzy finder.

timeit. A simple wrapper of an IO computation to show the used CPU time.

dataframe. A fast, safe, and intuitive DataFrame library.

HaskellR. The full power of R in Haskell.

chatterbox. R

insitu. In-place modification of vectors

ghcitui. A Terminal User Interface for the Glasgow Haskell Compiler Interactive Mode

fnmate. A function definition generator.

tmux-logging. Easy logging and screen capturing for Tmux.

JuliaConnectoR. A functionally oriented interface for calling Julia from R

Ridian. This is Ridian: R in Obsidian

noTunes. A simple macOS application that will prevent iTunes or Apple Music from launching.

spaceline. Powerline theme from Spacemacs

roc. A fast, friendly, functional language.

hexmake. A Shiny App for Making Hex Stickers.

chronicler. R

trap. Autoregressive transformers in APL

lazytest. Runs only failing tests

flir. Parse and rewrite R code

devtag. Restrict Help Files to Development

ellmer. Call LLM APIs from R

fpinscala. Code, exercises, answers, and hints to go along with the book "Functional Programming in Scala"

tinylangs. Real programming languages in 50 lines of code

vapourize. R package to create Vapour projects

vapour. Typed superset of R

websites_checker. Gleam

hugo-notice. A Hugo theme component to display nice notices

dotty. Destructuring assignments in R with the `.` object.

LossRider. A plotting tool that outputs Line Rider maps, so you can watch a man on a sled scoot down your loss curves. 🎿

tin-summer. Find build artifacts that are taking up disk space

plb2. A programming language benchmark

llm-gpt4all. Plugin for LLM adding support for the GPT4All collection of models

minutemaker. Generate meeting minutes starting from an audio recording or a transcripts using speech-to-text and LLMs.

carelesswhisper. Automatic speech recognition in R using whisper.cpp

this.path. R package this.path

emoji-board. Haskell

introduction-to-bash-scripting. Free Introduction to Bash Scripting eBook

presenterm. A markdown terminal slideshow tool

sucle. Common Lisp Voxel Game Engine

graham-essays. 📚 Download the full collection of Paul Graham essays in EPUB, PDF & Markdown for easy reading.

marker. Convert PDF to markdown + JSON quickly with high accuracy

mesh-spreadsheet. A data and code editor that feels like a spreadsheet.

BQN.jl. BQN implementation in Julia

amber. 💎 Amber the programming language compiled to Bash/Ksh/Zsh

RUiua. Interact with and run R code from Uiua. Also includes Plots.

Stirling-PDF. #1 PDF Application on GitHub that lets you edit PDFs on any device anywhere

obsidian-plugin-vault-ai. Infuse AI into your Obsidian Vault

Vane. Vane is an AI-powered answering engine.

PheKnowLator. PheKnowLator: Heterogeneous Biomedical Knowledge Graphs and Benchmarks Constructed Under Alternative Semantic Models

tu. CLI tool to convert a natural language date/time string to UTC

TrypLik. Tryptase Variant Likelihoods

zellij. A terminal workspace with batteries included

playdate. Playdate Dev Tools and API

chess-tui. Play chess in any terminal. Rust TUI, Stockfish, Lichess.

lunch.rs. Rust for Lunch Meetup

ggplot-extension-club. A repository as a discussion place for extending the ggplot2 R package

termlisp. A lisp dialect based on pattern matching and term rewriting

codel. ✨ Fully autonomous AI Agent that can perform complicated tasks and projects using terminal, browser, and editor.

jan. Jan is an open source alternative to ChatGPT that runs 100% offline on your computer.

Toshy. Keymapper config to make Linux keyboard shortcuts work like a 'Tosh! And more. (A Kinto alternative.)

sapio-py-tutorials. Tutorial on how to use Sapio platform in Python 3.