This is your work, valued

Cambridge, UK

John Lees

Expert
@johnlees

Research Group Leader at EMBL-EBI. Software is for statistical genetics/bacteria/genomic epidemiology/modelling

johnlees.me

seer. sequence element (kmer) enrichment analysis

45

23andme-impute. Scripts and advice to run IMPUTE2 on 23 and me raw data

22

bioinformatics. Utilities written for bioinformatics

17

which_tree. Testing of phylogenetic inference methods

9

tajima-D. calculates tajima's D from bcftools query input

4

rapidnj. Code for rapidNJ by Martin Simonsen, Thomas Mailund and Christian N. S. Pedersen.

4

efficient-bge. scripts and methods for fast bacterial genomic epidemiology

4

R_plots. Some scripts to create plots in R

2

pyseer. SEER, reimplemented in python

2

PopPUNK-web. Web version of PopPUNK

2

paired-samples. Scripts and plots used for 'Large scale genomic analysis shows no evidence for pathogen adaptation between the blood and cerebrospinal fluid niches during bacterial meningitis'

1

config. Config files stored in ~

1

cuda_rng_benchmarking. Benchmarking the RNG in dust against curand

1

PopPUNK-scripts. Scripts used to help produce extra analysis for the PopPUNK manuscript

1

genometrackr_access. Downloading data from NCBI Genometrackr

1