Justin B. Kinney

logomaker. Software for the visualization of sequence-function relationships

mavenn. MAVE-NN: genotype-phenotype maps from multiplex assays of variant effect

16_titeseq. Processed data and analysis code for Adams et al., 2016 bioRxiv

14_crispr. Code and processed data reported in Shi et al. (2015) Nat. Biotechnol. [in press]

18_urp. Excercises for the 2018 URP programming workshop

gaugefixer. GaugeFixer package and manuscript

14_maxent. Code for "Unification of Field Theory and Maximum Entropy Methods for Learning Probability Densities" (2014) by Justin B. Kinney, available at http://arxiv.org/abs/1411.5371

24e_urp. Code for the 2024 CSHL URP Python Programming Course

25e_programming_bootcamp. 25e Programming Bootcamp Materials - Python, Bash, R, and Bioinformatics exercises

22e_qbbootcamp. Materials for the 2022 QB Bootcamp at Cold Spring Harbor Laboratory

15_splicing. Jupyter Notebook

24_posfai1. Jupyter Notebook

17_qbbootcamp. Exercises for the 2017 WSBS QB Bootcamp

15_sordella. Python

13_deft. Code for "Rapid and Rapid and deterministic estimation of probability densities using scale-free field theories" arXiv:1312.6661 [physics.data-an]

19_mlcb. Code for Tareen & Kinney (MLCB 2019) https://doi.org/10.1101/835942

23e_qbbootcamp. 2023 Quantitative Biology Bootcamp at Cold Spring Harbor Laboratory

22_drugs. 22_drugs

poolparty-statetracker. Python