Daniel Himmelstein

drugbank. User-friendly extensions of the DrugBank database

obonet. OBO-formatted ontologies → networkx (Python 3)

scopus. User-friendly Scopus and Journal Metrics data

integrate. Scripts and resources to create Hetionet v1.0, a heterogeneous network for drug repurposing

lincs. Library of Integrated Cellular Signatures L1000

clintrials. Cataloging pharmacotherapies in clinical trial from ClinicalTrials.gov

hackjohn. Bot to monitor for southbound permit spaces on the John Muir Trail

disgenet. Processing the DisGeNET database of disease–gene association

SIDER4. Processing SIDER 4.1: the side effect resource

openskistats. The study of skiing where we shred open data like pow. Quantifying alpine ski areas with geospatial metrics derived from OpenStreetMap.

bitcoin-whitepaper. Reproducing the Bitcoin Whitepaper using the Manubot

dump-actions-context. Expose GitHub actions context based on the workflow event type

hsdn. Analysis of the human symptoms–disease network

indications. Processing high-throughput drug indication resources.

disease-ontology. User-friendly extensions to the Disease Ontology

plostime. Publication delays at PLOS and 3,475 other journals

delays. Trends in scientific publishing delays

mesh. User-friendly extensions to MeSH

pubmedpy. Utilities for interacting with NCBI EUtilities relating to PubMed

biorxiv-licenses. The licensing of bioRxiv preprints

gene-ontology. User-friendly Gene Ontology annotations

snplentiful. SNP abundance correlates with network degree

het.io-dag-data. Data backend for http://het.io/disease-genes

drugcentral. Converting DrugCentral data to Rephetio identifiers

uniprot. Extract uniprot mappings to other vocabularies

psb-manuscript. Manuscript source for the People of the Pacific Symposium on Biocomputing