C. Titus Brown

pony-build. A simple continuous integration system, written in Python.

advanced-swc. Intermediate and Advanced Software Carpentry tutorial material

twill-legacy. A simple command-line Web browser, for testing and Web automation.

figleaf. A code coverage recording and analysis tool for Python

2019-snakemake-ucdavis. Intro to workflows for efficient automated data analysis, using snakemake.

theproj. Test project for software carpentry

2013-pycon-awesome-big-data-algorithms.

SomePackage. A simple example package for thinking about test packaging.

meep. Meep! A simple messageboard implementation for a class.

screed. a simple read-only sequence database, designed for short reads

titus-blog. My blog.

edda. JavaScript

khmer-ngram. Simple probabilistic de Bruijn graph representation

2025-ncbi-rest-api. Grabbing genome accessions & download info based on taxonomy, using the NCBI REST API, w00t

blastkit. Python

2012-paper-diginorm. Paper source, analysis notebook, and data generation/analysis scripts for diginorm paper

2017-ucdavis-igg201b. Jupyter Notebook

pygr. Python graph database framework for bioinformatics

willow. Genome visualization on the cheap

labibi. Python

2022-assembly-summary-to-lineages. Convert NCBI assembly_summary files into sourmash taxonomy databases.

2016-mybinder-irkernel. Jupyter Notebook

pygr-draw. Simple drawing code for pygr features

deepchem-book. Code exploration from Deep Learning for the Life Sciences: Applying Deep Learning to Genomics, Microscopy, Drug Discovery, and More

2014-megahit-evaluation.

khmer-recipes. Python

2017-binder-workshop-notes.

cse491-2012-examples.

2015-sbt-demo. Python

sourmash_plugin_load_from_fasta. An experimental plugin to load sketches from a FASTA/FASTQ file with lazy sketching.

paper-reviews.