Colin Diesh

awesome-genome-visualization. A list of interesting genome browser and genome visualization programs

oddgenes. A small database of weird gene annotations

aws_serverless_photo_gallery. TypeScript

mafviewer. A JBrowse 1 plugin to view multiple alignment format (MAF) files

nextjs-appdir-blog. A basic setup for creating a static site/blog using the nextjs "app" directory

technical_oddities. A compilation of short descriptions of tech oddities that are weird, debunked or not

graphgenomeviewer. Web based viewer for small to medium GFA format files, similar to Bandage

fml9000. work in progress music player with GUI (Rust+GTK4) and TUI (Ratatui)

logistic_chaos_map. A visualizer for the logistic map, also a demo of rust/wasm+react in a monorepo

secondary_rewriter. Adds SEQ and QUAL to secondary alignments from SAM/BAM/CRAM

awesome-jbrowse. A list of cool jbrowse stuff and links around the web

travigraph. Graph travis-ci build times using command line tools. Deprecated in favor of https://github.com/cmdcolin/travigraphjs

travigraphjs. A website to plot travis-CI build times

awesome-jbrowse2. TypeScript

oddbiology. A collection of weird biological phenomena

dotfiles. My dotfiles

npm-package-tutorial. TypeScript

babel-array-flat-demo. Demonstrates babel setup to polyfill Array.prototype.flat

cmdcolin.github.io. Homepage

jbrowse_piechart. A jbrowse plugin that plots the variant data as a piechart

rust_react_monorepo_template. JavaScript

vcfverifier. Check that a VCF matches a given reference genome

tumblrgraph2. Graph tumblr reblogs with cytoscape.js

jbrowse-plugin-graphgenomeviewer. A JBrowse 2 graph genome viewer (WIP)

track_layout_benchmark. Benchmarking different layout algorithms used for genomic feature tracks

bam_index_visualizer. TypeScript

mysetup.nvim. based on kickstart.nvim

cra-webpack5-web-worker-example. TypeScript

genomesignals. A collection of types of genomic signals different people plot

colorbycds. A JBrowse plugin to color the features and DNA track according the coding frame

twitter_fractal_bot. Posts random images of fractals to twitter

bed2gff. cool BED-to-GFF3 converter that runs in parallel