Alex Rogozhnikov

einops. Flexible and powerful tensor operations for readable and reliable code (for pytorch, jax, TF and others)

python3_with_pleasure. A short guide on features of Python 3 with examples

hep_ml. Machine Learning for High Energy Physics.

3d_nn. Raymarching neural network in browsers with WebGL shaders

infiniteboost. InfiniteBoost: building infinite ensembles with gradient descent

eindex. Multidimensional indexing for tensors

arogozhnikov.github.io. 'Brilliantly wrong' blog, Machine Learning visualizations live here

adamw_bfloat16. AdamW optimizer for bfloat16 models in pytorch 🔥.

readable_capsnet. Blazingly fast capsule networks in 75 lines of pytorch+einops

demuxalot. Reliable, scalable, efficient demultiplexing for single-cell RNA sequencing

rtg_score. Rank-To-Group score evaluates contribution of confounding factors

DeepMMD-GAN. Yet another (very simple) approach for adversarial training.

cats. Test of algorithms on highly-categorical data

YSDA_ICL. Materials for the course of machine learning at Imperial College

OBDT. Pruning experiments

FakeLeptons. FakeLeptons recognition for CMS experiment

AgentNet. A lightweight library to build and train Deep Reinforcement Learning agents using Theano+Lasagne

iview5d. Extremely simplistic viewer of small ndimensional patches for jupyter notebook. Powered by einops

rep. Machine Learning toolbox for Humans

MLatImperial2017. Materials for the course of machine learning at Imperial College organized by YSDA

mlhep2016. MLHEP 2016 materials

REP_tutorial. Examples of using yandex/rep framework

pytorch. Tensors and Dynamic neural networks in Python with strong GPU acceleration

r2_fsspec. Support of r2 storage in fsspec as r2://

tcr-matching. Learning T-cell immunity *without* knowing peptides

GW150914. :wavy_dash::earth_africa::wavy_dash: Analyse GW150914 (gravitational waves)

streamlit-aggrid. Implementation of Ag-Grid component for Streamlit

sloths. when pandas is too much hassle

micro-openfold. update openfold code to make it pip-installable in 2024. Skips compiling binaries

microANARCI. Minified version of ANARCI, pip-installable

arogozhnikov.

microDockQ. minified, pip-installable version of DockQ metric

cupy. NumPy & SciPy for GPU

s3fs. S3 Filesystem

tooltool. Personal tools used in various places

pysam. Pysam is a Python module for reading and manipulating SAM/BAM/VCF/BCF files. It's a lightweight wrapper of the htslib C-API, the same one that powers samtools, bcftools, and tabix.

kronecker-attention-pytorch. Implementation of Kronecker Attention in Pytorch

cellxgene-gateway. Cellxgene Gateway allows you to use the Cellxgene Server provided by the Chan Zuckerberg Institute (https://github.com/chanzuckerberg/cellxgene) with multiple datasets.

mlp-mixer-pytorch. An All-MLP solution for Vision, from Google AI

demuxlet. Genetic multiplexing of barcoded single cell RNA-seq