MatthewChen

PPIFlow. de novo design of high affinity biological binders

AF3Score. A Score-Only Adaptation of AlphaFold3 for Biomolecular Structure Evaluation

TorchFold. Pytorch reimplementation of AlphaFold3

RibbonFold. Source code for the reproduction of RibbonFold paper.

AtomicFrustratometer_Results. Results for atomic frustratometer manuscript.

pyFrustratometer. Google Colab/Python implementation of AWSEM frustratometer

PackingFrustration_Refinement. Atomic packing frustratometer using Rosetta

awsemmd. Associated memory, Water mediated, Structure and Energy Model (AWSEM) protein simulation code