jinyuan sun

PymolFold. Protein folding in Pymol

DDGScan. DDGScan: an integrated parallel workflow for the in silico point mutation scan of protein

mutation-stability-data.

CMPP. Annotate C(CAZy)M(MEROPS)P(PHI)P(P450) for fungi.

elmsuite. Simple, unified interface to multiple evolutionary language models (including Protein, DNA, and RNA))

gemma-chinese. Finetune Gemma for Chinese

get-sequence-fasta-by-UniProt-ID. Python

DEPECT. Design and Engineering of Protein and Enzymes by Computational Tools

ChatEnzyme. Ask anything about enzymes

Computational-tools-for-protein-design. A maintained list of tools for computational protein design

pymol-vis. PyMOL extensions for protein artification

JinyuanSun.github.io. CSS

drug_pred. Python

denoising-diffusion-pytorch. Implementation of Denoising Diffusion Probabilistic Model in Pytorch

jinyuansun.

ByProt.

MONN. MONN: a Multi-Objective Neural Network for Predicting Pairwise Non-Covalent Interactions and Binding Affinities between Compounds and Proteins

lab-gui-tools. GUI tools for my lab

MSAddG. Python

Pythia-GRASP. Structure-based self-supervised learning enables ultrafast prediction of stability changes upon mutations

ddgscan-doc. Docs for ddgscan

song_of_fire. prediction of thermostability changes of proteins caused by (single point) mutations

deepddg-pytorch. Python

GPSE. Genome scAle Substrate Specific Enzyme pRediction

SeqDDG. Python

MPXV_research. Researches about Monkeypox virus

explore_motif_diversity. Python

pdbrefold. Python

FunclibLocal. Rosetta Funclib

CAMP. predicting peptide-protein interactions

signalp-6.0. Multi-class signal peptide prediction and structure decoding model.

maker-docker. Docker image as base for building full MAKER image

openmm-tutorial-msbs. OpenMM tutorial for the MSBS course

Linux-Tutorial. Linux Tutorial