DrCoffey

3DMorph. 3DMorph is a MATLAB-based script that analyzes microglia morphology from 3D data. Outputs include cell and territorial volume, branch length, and number of branch and end points.

fishFinder. MATLAB

CaGraph. Application of graph theory to summarize network behavior of neurons recorded using calcium fluorescence imaging.

SML_EMG. Supervised Machine Learning for Unfiltered EMG Recordings

DeepAcoustics. DeepAcoustics: Deep Learning Tool for Marine & Terrestrial Bioacoustic Data

dotdotdot. Example vignette for dotdotdot software

pMAT. Fiber Photometry Modular Analysis Tool Suite

DeepSqueak. DeepSqueak v3: Using Machine Vision to Accelerate Bioacoustics Research

VocalMat. Analysis of ultrasonic vocalizations from mice using computer vision and machine learning

simba. SimBA (Simple Behavioral Analysis), a pipeline and GUI for developing supervised behavioral classifiers

DeepSqueak. Fork of DeepSqueak for call screening

awesome-matlab. A curated list of awesome Matlab frameworks, libraries and software.

Surgery-G-Codes. G-codes for the stereotaxic robot

shap. A game theoretic approach to explain the output of any machine learning model.