Chris Hayduk

minAlphaFold2. A minimal PyTorch re-implementation of AlphaFold2's model & training

nanoFold-Competition. 10k protein structures, no time limit, best val loss wins

SimplexFold. Python

qlora-multi-gpu. QLoRA with Enhanced Multi GPU Support

QLoRA-for-MLM. QLoRA for Masked Language Modeling

Statistical-Rethinking-Solutions. Solutions for "Statistical Rethinking" by Richard McElreath

Llama-Thought-Cloning. A LLaMA-based repreoduction of "Thought Cloning: Learning to Think while Acting by Imitating Human Thinking"

JANUS-Peptide. Code for the paper "JANUS: Parallel Tempered Genetic Algorithm Guided by Deep Neural Networks for Inverse Molecular Design", modified to design new peptides

Optimized-AlphaFold-Multimer-Vertex-AI-Pipeline. This repository compiles prescriptive guidance and code samples demonstrating how to operationalize AlphaFold batch inference using Vertex AI Pipelines.

An-Introductory-Course-in-Computational-Neuroscience. Completed tutorials and questions from the book "An Introductory Course in Computational Neuroscience" by Paul Miller

Annotated-Papers. Website hosting paper deep dives

athena.ai. An AI-powered knowledge management and chat tool

obsidian-auto-anki. Using AI to automate card creation for Spaced Repetion in Anki

Obsidian-Notes.

Bayesian-Analysis. Assignments from my Bayesian Analysis independent study course